Top workflows by update

gynecoloji

snakemake_ATACseq_spikein

Reproducible Snakemake workflow for spike-in–normalized ATAC-seq — concatenated-genome alignment, MA…

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Updated: 2026-07-20 Release: v1.2.0formatting: failedlinting: failed

2 stars

0 watchers

modelblocks-org

module_demand_electricity

A module to prepare demand profiles for Europe at arbitrary spatial resolution, based on ENTSO-E his…

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Updated: 2026-07-18 Release: v0.1.0formatting: passedlinting: passed

0 stars

0 watchers

mkrg01

genome_assembly_pipeline

An integrated pipeline for eukaryotic genome assembly and gene annotation

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Updated: 2026-07-18 Release: Noneformatting: failedlinting: passed

4 stars

1 watchers

snakemake-workflows

rna-seq-xengsort

A standardized Snakemake workflow to separate host and graft sequencing reads from RNAseq data using…

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Updated: 2026-07-17 Release: v1.0.0formatting: passedlinting: passed

0 stars

0 watchers

modelblocks-org

module_powerplants

Harmonised global powerplant data at any resolution 🏭⚡

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Updated: 2026-07-17 Release: v0.1.0formatting: passedlinting: passed

1 stars

2 watchers

modelblocks-org

module_euro_gas_grid

A module to create disaggregated gas grid networks and H2 retrofits for European countries.

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Updated: 2026-07-17 Release: v0.1.3formatting: passedlinting: passed

0 stars

0 watchers

open2c

distiller-sm

a Snakemake version of distiller - the Open2C Hi-C mapping workflow

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Updated: 2026-07-17 Release: Noneformatting: failedlinting: failed

5 stars

6 watchers

Yegberink

module_geothermal

No description available.

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Updated: 2026-07-17 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

snakemake-workflows

dna-seq-varlociraptor

A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/nor…

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Updated: 2026-07-16 Release: v6.9.2formatting: passedlinting: passed

90 stars

6 watchers

tmweiskittel

tmw_analysis_emseq

No description available.

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Updated: 2026-07-15 Release: Noneformatting: failedlinting: failed

0 stars

0 watchers

gynecoloji

snakemake_ATACseq

No description available.

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Updated: 2026-07-15 Release: v1.1.0formatting: failedlinting: failed

0 stars

0 watchers

niekwit

rna-seq-salmon-deseq2

Snakemake workflow for RNA-Seq differential transcript analysis using Salmon/Deseq2

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Updated: 2026-07-15 Release: v0.8.0formatting: passedlinting: failed

6 stars

1 watchers

snakemake-workflows

dna-seq-benchmark

A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM…

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Updated: 2026-07-15 Release: v1.17.0formatting: passedlinting: passed

13 stars

0 watchers

MPUSP

snakemake-simple-mapping

A Snakemake workflow for the mapping of reads to reference genomes, minimalistic and simple.

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Updated: 2026-07-15 Release: v1.7.2formatting: passedlinting: passed

1 stars

1 watchers

ltalignani

evo-shave

DNAseq pipeline

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Updated: 2026-07-15 Release: Noneformatting: failedlinting: failed

0 stars

1 watchers