Package index • paneldesign

Panel design Functions to optimize genomic region panels
`select_greedy()`	Select mutations by maximal coverage
`reduce_panel()`	Reduce panel regions to input target ranges by respecting a minimum region size.
Evaluate Functions for evaluating given panels
`panel_to_patient()`	Get mapping of panel regions to covered patients and mutations.
`eval_panel()`	Evaluate and annotate a given set of regions (panel)
`eval_regions()`	Evaluate and annotate a given region to patient association data set
Mutation and ranges Functions to work with mutation data and genomic ranges
`mut_to_gr()`	Create GRanges object out of mutations
`mut_to_reg_gr()`	Create unique regions of fixed size around mutations as GRanges
`get_exons()`	Get all exons as GRanges object
Data Toy example datasets
`gr_toy`	A toy example genomic ranges object.
`mut_toy`	A toy example data set linking patients to mutations.
`sv_toy`	A toy example data set linking patients to structural variants

Reference