R/easyquant.R
transform_for_requant.Rd
Creates a table with context sequences for re-quantification analysis with EasyQuant.
transform_for_requant(df)
A data.frame with splice junctions in rows and at least the columns:
cts_id
hash id for a context sequence
cts_seq
The transcript context sequence.
cts_junc_pos
The position of the junction within the context sequence
A tibble that can be used for re-quantification with EasyQuant This tibble has the columns
name
: Name of the input sequence.
sequence
: The context sequence that will be requantified.
position
: The position of the junction within the context sequence.