Creates a table with context sequences for re-quantification analysis with EasyQuant.

Creates a table with context sequences for re-quantification analysis with EasyQuant.

transform_for_requant(df)

Arguments

df

A data.frame with splice junctions in rows and at least the columns:

• cts_id hash id for a context sequence

• cts_seq The transcript context sequence.

• cts_junc_pos The position of the junction within the context sequence

Value

A tibble that can be used for re-quantification with EasyQuant This tibble has the columns

• name: Name of the input sequence.

• sequence: The context sequence that will be requantified.

• position: The position of the junction within the context sequence.