Imports "IRFinder-IR-nondir.txt" from IRFinder short mode and transforms the raw output into standardized junction output format.

Imports "IRFinder-IR-nondir.txt" from IRFinder short mode and transforms the raw output into standardized junction output format.

parse_irfinder_txt(path, warnings = FALSE, irratio = 0.1, cnn = FALSE)

Arguments

path

The path to "IR-(non)dir-(val).txt"

warnings

Filter out IR calls with Warnings

irratio

Filter out IR calls with IRRatio <= this parameter

cnn

Use CNN validated table as input instead of standard output table

Value

A tibble in standardized junction format

path <- system.file("extdata", "", package = "splice2neo") ir_juncs <- parse_irfinder_txt(path) ir_juncs