Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>

Source: R/define_junc_id.R

Transforms breakpoint IDs (BPID) with given transcription strand into the junction ID of the format <chr>:<start>-:<end>:<strand>

breakpoint2junc(breakpoint_id, strand)

Arguments

breakpoint_id

The breakpoint id in the format <chr>:<start>-<chr>:<end>

strand

Strand information. "+" or "-"

Value

The junction id in the format <chr>:<start>-<end>:<strand>

Examples


breakpoint_id <- "chr1:500000-chr1:1000000"
breakpoint2junc(breakpoint_id = breakpoint_id, strand = "+")