Transform a bed file into junction format

Source: R/bed_to_junc.R

Transform a bed file into junction format

bed_to_junc(bed_file, type = "exon-exon")

Arguments

bed_file

Path to the bed file

type

Use for this parameter

  • exon-exon if the bed file defines exon-exon boundaries

  • intron if the bed file defines introns

Value

A character vector with junction IDs